Fitness Landscapes

Fitness Landscapes preview image

1 collaborator

Default-person Joan Puig (Author)

Tags

evolution 

Tagged by Joan Puig almost 10 years ago

fitness 

Tagged by Joan Puig almost 10 years ago

genetic algorithms 

Tagged by Joan Puig almost 10 years ago

genetics 

Tagged by Joan Puig almost 10 years ago

landscape 

Tagged by Marzieh Jahanbazi about 10 years ago

Parent of 1 model: Child of Fitness Landscapes
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Model was written in NetLogo 3D 5.0.5 • Viewed 845 times • Downloaded 53 times • Run 0 times
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## WHAT IS IT?

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## HOW IT WORKS

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## HOW TO USE IT

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## EXTENDING THE MODEL

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## NETLOGO FEATURES

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Comments and Questions

How does it work?

Hi Joan, thanks very much for sharing this great model. I tried to run it in NetLogo 6.2 but it doesn't work. Could you kindly let me know how I can solve the problem? Thanks a lot!

Posted almost 4 years ago

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breed [ stayers stayer ] ;; static turtles
breed [ walkers walker ] ;; dinamic turrtles


globals[t meanfit max-elevation]
walkers-own [fitness]
stayers-own [f2]

to setup
  
  clear-all

  ask patches with [pzcor = 0]
  [
    sprout-stayers 1
    [
      create-links-with turtles-on neighbors4 
      ht ;; make the turtle invisible
    ]
  ]
end 

to mini-setup
  
  ask walkers [die]
  clear-plot
  reset-ticks
end 

to create-random-peak [optimx optimy altura gruix]
  

ask stayers
[
  set f2 f2 + altura * exp ( (-1) * ( ( (xcor - optimx) * (xcor - optimx)  + (ycor - optimy) * (ycor - optimy) ) / gruix ) )
]
end 

to setup-peak

  ask stayers with [pxcor = max-pxcor or pxcor = min-pxcor or pycor = max-pycor or pycor = min-pycor]
  [set f2 0]
  
  set max-elevation max [f2] of stayers
  
  ask stayers
  [
    set zcor (f2 / max-elevation) * ( max-pzcor - 10 ) ;;elevate the points (stayers)
  ]
end 

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to create-one-peak
  
  ask stayers [set f2 0]
  
  
  create-random-peak random-xcor random-ycor height width
  
  setup-peak
end 

to create-two-peaks
  
  ask stayers [set f2 0]
  
  
  
  create-random-peak random-xcor random-ycor height width
  create-random-peak random-xcor random-ycor height width
  
  setup-peak
end 

to landscape1
  
  ask stayers [set f2 0]
  
  
  
  repeat 10
  [ 
  create-random-peak random-xcor random-ycor random-float 1 random-float 30
  ]
  
  
  setup-peak
end 

to landscape2
  
  ask stayers [set f2 0]
  
  
  repeat 10
  [
  let r1 random-xcor
  let r2 random-ycor
  let h1 random-float 1
  let w1 random-float 150
  create-random-peak r1 r2 h1 w1
  ;show r1 
  ;show r2 
  ;show h1
  ;show w1
  ]
  
  setup-peak
end 

to landscape3
  
  ask stayers [set f2 0]

    create-random-peak random-xcor random-ycor 1 10
    create-random-peak random-xcor random-ycor 0.7 30
    create-random-peak random-xcor random-ycor 0.6 40
    create-random-peak random-xcor random-ycor 0.4 40
    create-random-peak random-xcor random-ycor 0.2 40
  
    setup-peak
end 

to landscape4
  
  
  create-random-peak 15 15 1 40
  create-random-peak -15 -15 1 40
  create-random-peak 15 -15 1 40
  create-random-peak -15 15 1 40
  
  setup-peak
end 

to setup-flattest
  
  
  create-random-peak 10 0 0.3 600
  create-random-peak -15 0 1 6
  
  setup-peak
end 
  
;; Crear les tortugues

to crear-elements
  
  ask n-of num-turtles stayers[
    hatch-walkers 1 [
      st
      set color red
      set shape "circle"
    ]
  ]
  reset-ticks
end 

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to p1
  
  repeat 50
  [
  create-random-peak random-xcor random-ycor 1 50
  ]
  
  setup-peak
end 
  



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to random-walk

ask walkers
[
  let here one-of stayers-here
  let there one-of [link-neighbors] of here
  move-to there
]
end 

to algoritm
  
  ask walkers
  [
    set fitness sum [f2] of stayers-here
  ]
  
  set meanfit mean [fitness] of walkers
 
  let survivor turtle-set (walkers with [fitness >= meanfit])
  let extinct turtle-set (walkers with [fitness < meanfit])
  
  ask extinct
  [
    if random-float 1 < probcol;; the turtle die
    [
      let a one-of stayers
      setxyz [xcor] of a [ycor] of a [zcor] of a 
    ]
    if random-float 1 < 1 - probcol;;the mother turtle has a "baby"
    [ 
      if count survivor != 0
      [
        let b one-of survivor 
        let c stayers with [ xcor = [xcor] of b and ycor = [ycor] of b and zcor = [zcor] of b ]
        move-to one-of [link-neighbors] of one-of c
      ]
    ]
    
  ]
end 

to go
  
  
  if ticks = 1000 and j300 [stop]
  
  tick
  
  repeat evolutive-speed [random-walk]
  algoritm
  
  set-current-plot-pen "pen-1"
  plotxy ticks meanfit
end 

There is only one version of this model, created over 10 years ago by Joan Puig.

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Fitness Landscapes.png preview Preview for 'Fitness Landscapes' over 10 years ago, by Joan Puig Download

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