ABM_CC

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Part of project 'HPV-CC'
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globals[ dado dado2 n-cell n-cell-cn1 n-cell-cn2 n-cell-cn3 ncc n-cell-l  n-cell-del n-cell-ndel T P]
turtles-own [crbp egfr psgs p53 rb cn1 cn2 cn3 cr clr edad]
patches-own [espacio]
;extensions [matrix rserve]
;extensions [r]

to setup
  __clear-all-and-reset-ticks
  set-default-shape turtles "circle"
  crt cuantos 
  ask turtles [set xcor random 100  set ycor -100  set color red fd 1]
  ask patches [if (any?  turtles-here = true)[set espacio false]]
  ask patches [if (espacio = false)[ask one-of turtles-here [fd 1]]]
  set-patch-size 20
  resize-world -10 10 -10 10
  ask patches [set pcolor grey ]
  ask turtles [set crbp  0  set egfr  0 set psgs 0 set p53  0  set rb 0  set clr color set edad 0 set cn1 false set cn2 false set cn3  false]
  set n-cell count turtles
  set ncc 0
  set P (random 6 + random 6)
  set T 0
  set n-cell-del count turtles with [egfr > 0]
  set n-cell-ndel count turtles with [crbp > 0]
  show (random 2) - (random 3)
end 

to go
  ;movie-start "peli.mov"
  ;movie-grab-view 
  ;repeat 30
  ask turtles [if (any? other turtles-here )[fd 1]]
  ask turtles [set edad edad + 1 ]
  ask n-of 80 turtles [divide]
  ask n-of 10 turtles [lesion_cn1 lesion_cn2 lesion_cn3]
  set n-cell count turtles
  set n-cell-cn1 count turtles with [cn1 = true]
  set n-cell-cn2 count turtles with [cn2 = true]
  set n-cell-cn3 count turtles with [cn3 = true]
  if  n-cell > 350 [muerte]
  CNR
  QT
  QIR
  grafica
  set T T + 1
  set n-cell-del count turtles with [egfr > 0]
  set n-cell-ndel count turtles with [crbp > 0]
  tick
  if T = 20000 or ncc >= floor (0.75 * n-cell)[ print ("fin de la simulaciĆ³n") stop]
  ;movie-grab-view 
  ;movie-close
end 

to divide
  if edad >= 1 [ifelse vph_ = true [ifelse color != black  [hatch 1  [set crbp  ((random 2) - (random 3))  set egfr ((random 2) - (random 3)) set psgs ((random 2) - (random 3))  set p53  ((random 2) - (random 3)) 
  set rb ((random 2) - (random 3))  set edad 0 fd 1 if (any? other turtles-here )[fd 1] set color red set clr color colorear   set cn1 false set cn2 false set cn3 false]]
  [ifelse tratamiento1 = true [if edad >= 6[die]][hatch 1[set crbp ((random 2) - (random 3))  set egfr ((random 2) - (random 3)) set psgs ((random 2) - (random 3))  set p53  ((random 2) - (random 3)) 
  set rb ((random 2) - (random 3))  set edad 0 fd 1 if (any? other turtles-here )[fd 1] set color black set clr color] set cn3  true]]][hatch 1 [set crbp  0  set egfr  0 set psgs 0 set p53  0  set rb 0  
  set clr color set edad 0 set cn1 false set cn2 false set cn3  false if (any? other turtles-here )[fd 1]] ]]
end 

to colorear
  ifelse crbp = 0 [set color clr][ifelse crbp > 0 [set color clr + random-float 3][set color clr - random-float 3]]
  ifelse egfr = 0 [set color clr][ifelse egfr > 0 [set color clr - random-float 3][set color clr + random-float 3]]
  ifelse psgs = 0 [set color clr][ifelse psgs > 0 [set color clr + random-float 3][set color clr - random-float 3]]
  ifelse p53 = 0 [set color clr][ifelse p53 < 0 [set color clr + random-float 3][set color clr - random-float 3]]
  ifelse rb = 0 [set color clr][ifelse rb < 0 [set color clr + random-float 3][set color clr - random-float 3]]
  if clr = white [set color 13]
end 

to muerte
  ask n-of por_morir turtles [if edad >= 12  or (color = black and edad >= 8) or (p53 < 0 and edad >= 12) or (rb < 0 and edad >= 12) [ die ]]
end 

to lesion_cn1
set dado  random 6  
set dado2 random 6
if vph_ = true and (dado + dado2) = 2 [ask n-of (floor(0.3 * (n-cell)) )turtles [if (P != 7 and P > 6) [set cn1 true]]]
end 

to lesion_cn2
set dado random 6
set dado2 random 6
if vph_ = true and (dado2 + dado) = 5 [ask n-of (floor(3 * (n-cell-cn1))/(10)) turtles with [cn1 = true] [if  (P != 7 and P > 2) [set cn2 true]]]
end 

to lesion_cn3 
set dado random 6  
set dado2 random 6
if vph_ = true and (dado2 + dado) = 7 [ask n-of (floor((3 * (n-cell-cn2))/(10))) turtles with [cn1 = true and cn2 = true][if  P != 7 [set cn3 true]]]
end 

to grafica
  plot n-cell 
  plot n-cell-cn1 
  plot n-cell-cn2 
  plot n-cell-cn3
end 

to CNR
 set dado random 6
 set dado2 random 6
 ask turtles [if cn3 = true  and egfr > 0 and (dado + dado2) != 7 [set color black set clr color]]
 set ncc count turtles with [color = black]
end 

to QT
  if tratamiento1 = true  [ask turtles with [cn3 = true][ifelse crbp >= 0 and egfr < 0 [set color red set clr color colorear][set color black set clr color]]]  
end 

to QIR
  if tratamiento2 = true [ask turtles with[color = black][die]]
end 

  

There are 2 versions of this model.

Uploaded by When Description Download
Augusto Cabrera-Becerril 8 months ago Late version Download this version
Augusto Cabrera-Becerril 11 months ago Initial upload Download this version

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File Type Description Last updated
ABM_CC.png preview preview 8 months ago, by Augusto Cabrera-Becerril Download

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